fr.inrialpes.exmo.align.impl
Class URIAlignment

java.lang.Object
  fr.inrialpes.exmo.align.impl.BasicAlignment
      fr.inrialpes.exmo.align.impl.URIAlignment

All Implemented Interfaces:

Cloneable, Iterable<Cell>, Alignment, Visitable

Direct Known Subclasses:

WSAlignment

public class URIAlignment
extends BasicAlignment

Represents an ontology alignment relating entities identified by their URIs

Version:

$Id: URIAlignment.java 1323 2010-03-10 10:54:28Z euzenat $

Author:

Jérôme Euzenat

Field Summary

Fields inherited from class fr.inrialpes.exmo.align.impl.BasicAlignment

debug, extensions, hash1, hash2, level, namespaces, onto1, onto2, time, type

Constructor Summary

URIAlignment()

Method Summary

Cell	addAlignCell(Object ob1, Object ob2)
Cell	addAlignCell(Object ob1, Object ob2, String relation, double measure) Cells are created and indexed at once
Cell	addAlignCell(String id, Object ob1, Object ob2, Relation relation, double measure) Cell methods
Cell	createCell(String id, Object ob1, Object ob2, Relation relation, double measure)
URIAlignment	createNewAlignment(Object onto1, Object onto2) Algebraic part This is to be improved by (TODO): - improving cell equivalence (maybe not dependent on the confidence...
Cell	getAlignCell1(Object ob) Cells are retrieved These primitives are deprecated.
Cell	getAlignCell2(Object ob) //@deprecated There is more than one cell about one object
Set<Cell>	getAlignCells1(Object ob) Cells are retrieved These primitives are deprecated.
Set<Cell>	getAlignCells2(Object ob)
void	init(Object o1, Object o2) Initialize the alignement before using it
void	setOntology1(Object ontology)
void	setOntology2(Object ontology)
URIAlignment	toURIAlignment() Returns default exception for conversion to URIAlignments

Methods inherited from class fr.inrialpes.exmo.align.impl.BasicAlignment

accept, addAlignCell, addCell, cleanUp, clone, compose, cut, cut, cut2, diff, dump, getAlignedObject1, getAlignedObject2, getAlignedRelation1, getAlignedRelation2, getAlignedStrength1, getAlignedStrength2, getArrayElements, getElements, getExtension, getExtensions, getFile1, getFile2, getLevel, getOntology1, getOntology1URI, getOntology2, getOntology2URI, getOntologyObject1, getOntologyObject2, getParameters, getType, getXNamespace, getXNamespaces, harden, ingest, init, inverse, iterator, join, meet, nbCells, remCell, removeAlignCell, render, setExtension, setExtensions, setFile1, setFile2, setLevel, setType, setXNamespace

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

URIAlignment

public URIAlignment()

Method Detail

init

public void init(Object o1,
                 Object o2)
          throws AlignmentException

Description copied from interface: Alignment

Initialize the alignement before using it

Specified by:

init in interface Alignment

Overrides:

init in class BasicAlignment

Throws:

AlignmentException

setOntology1

public void setOntology1(Object ontology)
                  throws AlignmentException

Specified by:

setOntology1 in interface Alignment

Overrides:

setOntology1 in class BasicAlignment

Throws:

AlignmentException

setOntology2

public void setOntology2(Object ontology)
                  throws AlignmentException

Specified by:

setOntology2 in interface Alignment

Overrides:

setOntology2 in class BasicAlignment

Throws:

AlignmentException

addAlignCell

public Cell addAlignCell(String id,
                         Object ob1,
                         Object ob2,
                         Relation relation,
                         double measure)
                  throws AlignmentException

Cell methods

Overrides:

addAlignCell in class BasicAlignment

Throws:

AlignmentException

addAlignCell

public Cell addAlignCell(Object ob1,
                         Object ob2,
                         String relation,
                         double measure)
                  throws AlignmentException

Description copied from interface: Alignment

Cells are created and indexed at once

Specified by:

addAlignCell in interface Alignment

Overrides:

addAlignCell in class BasicAlignment

Throws:

AlignmentException

addAlignCell

public Cell addAlignCell(Object ob1,
                         Object ob2)
                  throws AlignmentException

Specified by:

addAlignCell in interface Alignment

Overrides:

addAlignCell in class BasicAlignment

Throws:

AlignmentException

createCell

public Cell createCell(String id,
                       Object ob1,
                       Object ob2,
                       Relation relation,
                       double measure)
                throws AlignmentException

Overrides:

createCell in class BasicAlignment

Throws:

AlignmentException

getAlignCells1

public Set<Cell> getAlignCells1(Object ob)
                         throws AlignmentException

Description copied from interface: Alignment

Cells are retrieved These primitives are deprecated. Use getAlignCells1 and getAlignCells2 instead. Reason: this applies only for 1:1 alignments Some implementations might act cleverly (retrieving the best value). Basic implementations may raise the exception

Specified by:

getAlignCells1 in interface Alignment

Overrides:

getAlignCells1 in class BasicAlignment

Throws:

AlignmentException

getAlignCells2

public Set<Cell> getAlignCells2(Object ob)
                         throws AlignmentException

Specified by:

getAlignCells2 in interface Alignment

Overrides:

getAlignCells2 in class BasicAlignment

Throws:

AlignmentException

getAlignCell1

public Cell getAlignCell1(Object ob)
                   throws AlignmentException

Description copied from interface: Alignment

Cells are retrieved These primitives are deprecated. Use getAlignCells1 and getAlignCells2 instead. Reason: this applies only for 1:1 alignments Some implementations might act cleverly (retrieving the best value). Basic implementations may raise the exception //@deprecated There is more than one cell about one object

Specified by:

getAlignCell1 in interface Alignment

Overrides:

getAlignCell1 in class BasicAlignment

Throws:

AlignmentException

getAlignCell2

public Cell getAlignCell2(Object ob)
                   throws AlignmentException

Description copied from interface: Alignment

//@deprecated There is more than one cell about one object

Specified by:

getAlignCell2 in interface Alignment

Overrides:

getAlignCell2 in class BasicAlignment

Throws:

AlignmentException

toURIAlignment

public URIAlignment toURIAlignment()
                            throws AlignmentException

Returns default exception for conversion to URIAlignments

Overrides:

toURIAlignment in class BasicAlignment

Throws:

AlignmentException

createNewAlignment

public URIAlignment createNewAlignment(Object onto1,
                                       Object onto2)
                                throws AlignmentException

Description copied from class: BasicAlignment

Algebraic part This is to be improved by (TODO): - improving cell equivalence (maybe not dependent on the confidence... and grounding it on abstract data types) - using algebraic meet and join for relations and confidences (the type of relation used can be declared in the alignment) - check compatibility and setup for type and level - conserve extensions if necessary

Overrides:

createNewAlignment in class BasicAlignment

Throws:

AlignmentException