G-Index (Alignment API and Server)
Date: 2010-03-31

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| Alignment API and Server 4.0
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## G

generateAlignmentId() - Method in class fr.inrialpes.exmo.align.service.CacheImpl
generateCellId(String) - Method in class fr.inrialpes.exmo.align.service.CacheImpl
generator - Variable in class fr.inrialpes.exmo.align.impl.renderer.SEKTMappingRendererVisitor
GenPlot - Class in fr.inrialpes.exmo.align.util
  A basic class for synthesizing the alignment results of an algorithm by a precision recall graph.
GenPlot() - Constructor for class fr.inrialpes.exmo.align.util.GenPlot
getAlignCell1(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignCell1(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
getAlignCell1(Object) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
getAlignCell1(Object) - Method in interface org.semanticweb.owl.align.Alignment
  Cells are retrieved These primitives are deprecated.
getAlignCell2(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignCell2(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
getAlignCell2(Object) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
getAlignCell2(Object) - Method in interface org.semanticweb.owl.align.Alignment
  //@deprecated There is more than one cell about one object
getAlignCells1(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignCells1(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
getAlignCells1(Object) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
getAlignCells1(Object) - Method in interface org.semanticweb.owl.align.Alignment
  Cells are retrieved These primitives are deprecated.
getAlignCells2(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignCells2(Object) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
getAlignCells2(Object) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
getAlignCells2(Object) - Method in interface org.semanticweb.owl.align.Alignment
getAlignedDistance1(Object) - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
getAlignedDistance2(Object) - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
getAlignedObject1(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignedObject1(Object) - Method in interface org.semanticweb.owl.align.Alignment
  Each part of the cell can be queried independently.
getAlignedObject2(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignedObject2(Object) - Method in interface org.semanticweb.owl.align.Alignment
getAlignedRelation1(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignedRelation1(Object) - Method in interface org.semanticweb.owl.align.Alignment
getAlignedRelation2(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignedRelation2(Object) - Method in interface org.semanticweb.owl.align.Alignment
getAlignedStrength1(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignedStrength1(Object) - Method in interface org.semanticweb.owl.align.Alignment
getAlignedStrength2(Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAlignedStrength2(Object) - Method in interface org.semanticweb.owl.align.Alignment
getAlignment(String) - Method in class fr.inrialpes.exmo.align.service.CacheImpl
  retrieve full alignment from id (and cache it)
getAlignmentReferences(Ontology, Ontology) - Method in class fr.inrialpes.exmo.align.service.OysterDirectory
getAlignments() - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
getAlignments(URI) - Method in class fr.inrialpes.exmo.align.service.CacheImpl
getAlignments(URI, URI) - Method in class fr.inrialpes.exmo.align.service.CacheImpl
  returns the alignments between two ontologies if one of the ontologies is null, then return them all
getAlignments() - Method in interface org.semanticweb.owl.align.OntologyNetwork
getAllHasParameter() - Method in class fr.inrialpes.exmo.align.service.jade.messageontology.Action
getAnnotations(OWLEntity, String, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getArguments() - Method in class fr.inrialpes.exmo.align.impl.edoal.Apply
getArrayElements() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getAskResult() - Method in interface fr.inrialpes.exmo.queryprocessor.Result
getAUC() - Method in class fr.inrialpes.exmo.align.impl.eval.ROCCurveEvaluator
getCapabilities(int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getCapabilities(int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getCapabilities(int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getCardinalityRestrictions(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
  returns emptyset in case of error (e.g., if p is a property)
getClasses(String, Set<String>, Properties) - Method in class fr.inrialpes.exmo.align.service.WSAServProfile
getClasses(Object, int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getClasses() - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getClasses() - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
getClasses() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getClasses(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getClasses() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getClasses(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getClassSimilarity(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.MatrixMeasure
getClassSimilarity(Object, Object) - Method in interface fr.inrialpes.exmo.align.impl.Similarity
getCoDomain() - Method in class fr.inrialpes.exmo.align.impl.edoal.RelationCoDomainRestriction
getComparator() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassOccurenceRestriction
getComparator() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassValueRestriction
getComparator() - Method in class fr.inrialpes.exmo.align.impl.edoal.PropertyValueRestriction
getComponents() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
getComponents() - Method in class fr.inrialpes.exmo.align.impl.edoal.PropertyConstruction
getComponents() - Method in class fr.inrialpes.exmo.align.impl.edoal.RelationConstruction
getConnection() - Method in interface fr.inrialpes.exmo.align.service.DBService
getConnection() - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
getConstructResult() - Method in interface fr.inrialpes.exmo.queryprocessor.Result
getContent() - Method in class fr.inrialpes.exmo.align.service.Message
getContentType() - Method in class fr.inrialpes.exmo.align.service.HTMLAServProfile.Response
getCorrect() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
getData() - Method in class fr.inrialpes.exmo.align.service.HTMLAServProfile.Response
getDataProperties(Object, int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getDataProperties() - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getDataProperties() - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
getDataProperties() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getDataProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getDataProperties() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getDataProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getDefaultFactory() - Static method in class fr.inrialpes.exmo.ontowrap.OntologyFactory
getDirection() - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALRelation
  printable format
getDomain() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassDomainRestriction
getDomain() - Method in class fr.inrialpes.exmo.align.impl.edoal.PropertyDomainRestriction
getDomain() - Method in class fr.inrialpes.exmo.align.impl.edoal.RelationDomainRestriction
getDomain(ClassExpression) - Method in class fr.inrialpes.exmo.align.impl.edoal.RelationDomainRestriction
getDomain(Object, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getDomain(Object, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getDomain(Object, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEffPrecision() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getEffRecall() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getEffSimilarity() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getElement(SyntaxElement.Constructor) - Static method in enum fr.inrialpes.exmo.align.parser.SyntaxElement
getElementByName(String) - Static method in enum fr.inrialpes.exmo.align.parser.SyntaxElement
  Determines an element given on a name string.
getElements() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getElements() - Method in interface org.semanticweb.owl.align.Alignment
getEntities() - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntities() - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
  Returns all named entities having URI beginning with the ontology URI
getEntities(Class<? extends OWLEntity>) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntities() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntities() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntity(Object, String) - Method in class fr.inrialpes.exmo.align.parser.XMLParser
getEntity(URI) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntity(URI) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
getEntity(URI) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntity(URI) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntityAnnotations(Object, Set<String>, String) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityAnnotations(Object) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityAnnotations(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityAnnotations(Object) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
  Returns all the values of the "owl:AnnotationProperty" property for a given entity.
getEntityAnnotations(Object, String) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
  Returns all the values of the "owl:AnnotationProperty" property for a given entity expressed in the required language.
getEntityAnnotations(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntityAnnotations(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntityAnnotations(Object, URI, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
  type and lang can be null
getEntityAnnotations(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntityAnnotations(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntityComments(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityComments(Object) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityComments(Object, String) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
  Returns the values ofof textual properties (e.g., "rdfs:comment", rdfs:label in RDFS/OWL) for a given entity and for a given natural language (attribute xml:lang).
getEntityComments(Object) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
  Returns all the values of textual properties (e.g., "rdfs:comment", rdfs:label in RDFS/OWL) for a given entity
getEntityComments(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntityComments(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntityComments(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntityComments(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntityName(Object) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityName(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityName(Object) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
  returns the default name of an entity if specified.
getEntityName(Object, String) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
  returns the default name of an entity in a language (attribute xml:lang) if specified.
getEntityName(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntityName(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntityName(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntityName(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntityNames(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityNames(Object) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityNames(Object, String) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
  returns all the names of an entity in a language if specified.
getEntityNames(Object) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
  Returns all the names a given entity (e.g., rdfs:labels in OWL/RDFS).
getEntityNames(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntityNames(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntityNames(Object, String) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntityNames(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getEntityURI(Object) - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getEntityURI(Object) - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
getEntityURI(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getEntityURI(Object) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getExpected() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getExpected() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
getExpectedEntailed() - Method in class fr.inrialpes.exmo.align.impl.eval.SemPRecEvaluator
getExtension(String, String) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getExtension(String, String) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getExtension(String, String) - Method in class fr.inrialpes.exmo.align.impl.Extensions
getExtension(String, String) - Method in interface org.semanticweb.owl.align.Alignment
getExtension(String, String) - Method in interface org.semanticweb.owl.align.Cell
getExtensionCell(String, String) - Method in class fr.inrialpes.exmo.align.impl.Extensions
getExtensions() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getExtensions() - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getExtensions() - Method in interface org.semanticweb.owl.align.Alignment
  Extensions are a way to read and add other information (metadata) to the alignment structure itself.
getExtensions() - Method in interface org.semanticweb.owl.align.Cell
  Extensions are a way to read and add other information (metadata) to the Cell structure itself.
getFactory() - Static method in class fr.inrialpes.exmo.ontowrap.OntologyFactory
getFallout() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
getFile() - Method in class fr.inrialpes.exmo.ontowrap.BasicOntology
getFile() - Method in interface fr.inrialpes.exmo.ontowrap.Ontology
getFile1() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getFile1() - Method in interface org.semanticweb.owl.align.Alignment
getFile2() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getFile2() - Method in interface org.semanticweb.owl.align.Alignment
getFmeasure() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
getFormalism() - Method in class fr.inrialpes.exmo.ontowrap.BasicOntology
getFormalism() - Method in interface fr.inrialpes.exmo.ontowrap.Ontology
getFormURI() - Method in class fr.inrialpes.exmo.ontowrap.BasicOntology
getFormURI() - Method in interface fr.inrialpes.exmo.ontowrap.Ontology
getFound() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getFound() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
getFoundEntailed() - Method in class fr.inrialpes.exmo.align.impl.eval.SemPRecEvaluator
getFragmentAsLabel(URI) - Method in class fr.inrialpes.exmo.ontowrap.BasicOntology
getGlobalResult() - Method in class fr.inrialpes.exmo.align.impl.eval.AveragePRGraphEvaluator
  Retuns a simple global evaluation measure if any
getGlobalResult() - Method in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator
  Retuns a simple global evaluation measure if any
getGlobalResult() - Method in class fr.inrialpes.exmo.align.impl.eval.PRGraphEvaluator
getGlobalResult() - Method in class fr.inrialpes.exmo.align.impl.eval.ROCCurveEvaluator
getHasParameter() - Method in class fr.inrialpes.exmo.align.service.jade.messageontology.Action
getId() - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getId() - Method in class fr.inrialpes.exmo.align.impl.edoal.TransfService
  Returns the id of the transformation function.
getId() - Method in class fr.inrialpes.exmo.align.service.Message
getId() - Method in interface org.semanticweb.owl.align.Cell
  Creation
getIndividuals() - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getIndividuals() - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
getIndividuals() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getIndividuals() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getIndividualSimilarity(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.MatrixMeasure
getIndividualSimilarity(Object, Object) - Method in interface fr.inrialpes.exmo.align.impl.Similarity
getInheritedProperties(OWLClass) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
  Inherits all properties of a class
getInheritedProperties(OWLClass) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getInReplyTo() - Method in class fr.inrialpes.exmo.align.service.Message
getInstance() - Static method in class fr.inrialpes.exmo.align.service.jade.messageontology.JADEFIPAAlignmentServerOntology
getInstances(Object, int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getInstances(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getInstances(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getLevel() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getLevel() - Method in interface org.semanticweb.owl.align.Alignment
getManager() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3OntologyFactory
getMAP() - Method in class fr.inrialpes.exmo.align.impl.eval.AveragePRGraphEvaluator
getMap() - Method in class fr.inrialpes.exmo.align.impl.eval.PRGraphEvaluator
getMetadata(String) - Method in class fr.inrialpes.exmo.align.service.CacheImpl
  retrieve alignment metadata from id This is more difficult because we return the alignment we have disreagarding if it is complete o only metadata
getName() - Method in enum fr.inrialpes.exmo.align.parser.SyntaxElement
  Returns the xml name of the element.
getName() - Method in class fr.inrialpes.exmo.align.service.jade.messageontology.Parameter
getNames() - Method in class fr.inrialpes.exmo.align.impl.BasicParameters
getNames() - Method in interface org.semanticweb.owl.align.Parameters
getNamespace() - Method in enum fr.inrialpes.exmo.align.parser.SyntaxElement
  Returns the namespace of the element.
getNodeId(Resource) - Method in class fr.inrialpes.exmo.align.parser.RDFParser
getNSByUri(String) - Static method in enum fr.inrialpes.exmo.align.impl.Namespace
  Determines a namespace instance depending on it's url.
getObject() - Method in interface fr.inrialpes.exmo.queryprocessor.Triple
getObject1() - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getObject1() - Method in interface org.semanticweb.owl.align.Cell
getObject1AsURI() - Method in class fr.inrialpes.exmo.align.impl.BasicCell
  Since version 3.3, the interpretation of objects (and thus finding their URI) depends on the Ontology API which is used.
getObject1AsURI(Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getObject1AsURI(Alignment) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALCell
getObject1AsURI(Alignment) - Method in class fr.inrialpes.exmo.align.impl.ObjectCell
  Used to order the cells in an alignment: -- this > c iff this.getStrength() < c.getStrength() -- public int compareTo( Cell c ){ //if ( ! (c instanceof Cell) ) return 1; if ( c.getStrength() > getStrength() ) return 1; if ( getStrength() > c.getStrength() ) return -1; return 0; }
getObject1AsURI(Alignment) - Method in class fr.inrialpes.exmo.align.impl.URICell
getObject1AsURI() - Method in interface org.semanticweb.owl.align.Cell
  //@deprecated use getObject1AsURI( null ) instead
getObject1AsURI(Alignment) - Method in interface org.semanticweb.owl.align.Cell
getObject2() - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getObject2() - Method in interface org.semanticweb.owl.align.Cell
getObject2AsURI() - Method in class fr.inrialpes.exmo.align.impl.BasicCell
  Since version 3.3, the interpretation of objects (and thus finding their URI) depends on the Ontology API which is used.
getObject2AsURI(Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getObject2AsURI(Alignment) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALCell
getObject2AsURI(Alignment) - Method in class fr.inrialpes.exmo.align.impl.ObjectCell
getObject2AsURI(Alignment) - Method in class fr.inrialpes.exmo.align.impl.URICell
getObject2AsURI() - Method in interface org.semanticweb.owl.align.Cell
  //@deprecated use getObject2AsURI( null ) instead
getObject2AsURI(Alignment) - Method in interface org.semanticweb.owl.align.Cell
getObjectProperties(Object, int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getObjectProperties() - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getObjectProperties() - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
getObjectProperties() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getObjectProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getObjectProperties() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getObjectProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getOccurence() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassOccurenceRestriction
getOntologies() - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
getOntologies() - Method in interface org.semanticweb.owl.align.OntologyNetwork
getOntology() - Method in class fr.inrialpes.exmo.ontowrap.BasicOntology
getOntology() - Method in interface fr.inrialpes.exmo.ontowrap.Ontology
getOntology(URI) - Method in class fr.inrialpes.exmo.ontowrap.OntologyCache
getOntology() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getOntology1() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
  Alignment methods *
getOntology1() - Method in interface org.semanticweb.owl.align.Alignment
  The alignment has reference to the two aligned ontology.
getOntology1URI() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getOntology1URI() - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
getOntology1URI() - Method in class fr.inrialpes.exmo.align.impl.ObjectAlignment
getOntology1URI() - Method in interface org.semanticweb.owl.align.Alignment
getOntology2() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getOntology2() - Method in interface org.semanticweb.owl.align.Alignment
getOntology2URI() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getOntology2URI() - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
getOntology2URI() - Method in class fr.inrialpes.exmo.align.impl.ObjectAlignment
getOntology2URI() - Method in interface org.semanticweb.owl.align.Alignment
getOntologyFromURI(URI) - Method in class fr.inrialpes.exmo.ontowrap.OntologyCache
getOntologyObject1() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getOntologyObject2() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getOperation() - Method in class fr.inrialpes.exmo.align.impl.edoal.Apply
getOperator() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
getOperator() - Method in class fr.inrialpes.exmo.align.impl.edoal.PropertyConstruction
getOperator() - Method in class fr.inrialpes.exmo.align.impl.edoal.RelationConstruction
getOperator() - Method in enum fr.inrialpes.exmo.align.parser.SyntaxElement
  Returns the namespace of the element.
getOrientPrecision() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getOrientRecall() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getOrientSimilarity() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getOverall() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
getParameter(String) - Method in class fr.inrialpes.exmo.align.impl.BasicParameters
getParameter(String) - Method in interface org.semanticweb.owl.align.Parameters
getParameterMap() - Method in class fr.inrialpes.exmo.align.service.HTMLAServProfile.ParameterServletResponseWrapper
getParameters() - Static method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getParameters() - Method in class fr.inrialpes.exmo.align.impl.edoal.TransfService
  Returns an unmodifiable set of parameters needed for the transformation.
getParameters() - Method in class fr.inrialpes.exmo.align.service.Message
getParameters(Document) - Method in class fr.inrialpes.exmo.align.service.WSAServProfile
  Extract parameters from a DOM document resulting from parsing a SOAP messgae
getPlotResult(int) - Method in class fr.inrialpes.exmo.align.impl.eval.ROCCurveEvaluator
getPrecision(int) - Method in class fr.inrialpes.exmo.align.impl.eval.AveragePRGraphEvaluator
getPrecision() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
getPredicate() - Method in interface fr.inrialpes.exmo.queryprocessor.Triple
getPretty(String) - Method in class fr.inrialpes.exmo.align.service.AlignmentId
getPretty(String) - Method in class fr.inrialpes.exmo.align.service.EvaluationId
getProperties(Object, int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getProperties() - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntology
getProperties() - Method in interface fr.inrialpes.exmo.ontowrap.LoadedOntology
getProperties() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getProperties(OWLDescription, Set<Object>) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getProperties(OWLRestriction, Set<Object>) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getProperties(OWLNaryBooleanDescription, Set<Object>) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getProperties(OWLClass, Set<Object>) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getProperties() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getProperties(OWLClassExpression, Set<Object>, Set<Object>) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getProperties(OWLRestriction, Set<Object>, Set<Object>) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getProperties(OWLNaryBooleanClassExpression, Set<Object>, Set<Object>) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getProperties(OWLClass, Set<Object>, Set<Object>) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getPropertySimilarity(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.MatrixMeasure
getPropertySimilarity(Object, Object) - Method in interface fr.inrialpes.exmo.align.impl.Similarity
getRange(Object, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getRange(Object, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getRange(Object, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getRecall() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
getReceiver() - Method in class fr.inrialpes.exmo.align.service.Message
getRelation() - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getRelation() - Method in class fr.inrialpes.exmo.align.impl.BasicRelation
  printable format
getRelation(String) - Static method in enum fr.inrialpes.exmo.align.impl.edoal.EDOALRelation.Direction
getRelation() - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALRelation
  printable format
getRelation() - Method in interface org.semanticweb.owl.align.Cell
getRelation() - Method in interface org.semanticweb.owl.align.Relation
  Creation
getRes() - Method in class fr.inrialpes.exmo.align.impl.edoal.TransfService
  Returns the resource / uri to the transformation.
getResource(String) - Static method in enum fr.inrialpes.exmo.align.parser.SyntaxElement
  Returns the resource of the element.
getRestrictionPath() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassRestriction
getResult() - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager.Aligner
getResult() - Method in class fr.inrialpes.exmo.align.service.jade.messageontology.Action
getResults(Message) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
  Retrieve the results (all registered result) of a particular test
getSelectResult() - Method in interface fr.inrialpes.exmo.queryprocessor.Result
getSelectResultasXML() - Method in interface fr.inrialpes.exmo.queryprocessor.Result
getSemantics() - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getSemantics() - Method in class fr.inrialpes.exmo.align.impl.IDDLOntologyNetwork
getSemantics() - Method in interface org.semanticweb.owl.align.Cell
getSemantics() - Method in interface org.semanticweb.owl.align.LogicOntologyNetwork
getSender() - Method in class fr.inrialpes.exmo.align.service.Message
getSharp() - Method in enum fr.inrialpes.exmo.align.impl.Namespace
getShortCut() - Method in enum fr.inrialpes.exmo.align.impl.Namespace
getSimilarity() - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
getSourceAlignments(URI) - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
getSourceAlignments(URI) - Method in interface org.semanticweb.owl.align.OntologyNetwork
getStatus() - Method in class fr.inrialpes.exmo.align.service.HTMLAServProfile.Response
getStep() - Method in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator
getStrength() - Method in class fr.inrialpes.exmo.align.impl.BasicCell
getStrength() - Method in interface org.semanticweb.owl.align.Cell
getSubClasses(Object, int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getSubClasses(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getSubClasses(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getSubject() - Method in interface fr.inrialpes.exmo.queryprocessor.Triple
getSubProperties(Object, int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getSubProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getSubProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getSuperClasses(Object, int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getSuperClasses(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getSuperClasses(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getSuperProperties(Object, int, int, int) - Method in interface fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology
getSuperProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntology
getSuperProperties(Object, int, int, int) - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3Ontology
getSymPrecision() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getSymRecall() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getSymSimilarity() - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
getTargetingAlignments(URI) - Method in class fr.inrialpes.exmo.align.impl.BasicOntologyNetwork
getTargetingAlignments(URI) - Method in interface org.semanticweb.owl.align.OntologyNetwork
getTime() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
getTriples() - Method in interface fr.inrialpes.exmo.queryprocessor.RDFGraph
getType() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getType() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassTypeRestriction
getType() - Method in class fr.inrialpes.exmo.align.impl.edoal.PropertyTypeRestriction
getType() - Method in class fr.inrialpes.exmo.align.impl.edoal.Value
getType(String) - Method in class fr.inrialpes.exmo.align.service.QueryMediator
getType(String) - Method in interface fr.inrialpes.exmo.queryprocessor.QueryProcessor
getType() - Method in interface fr.inrialpes.exmo.queryprocessor.Result
getType() - Method in interface org.semanticweb.owl.align.Alignment
getURI() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassId
getURI() - Method in class fr.inrialpes.exmo.align.impl.edoal.Comparator
getURI() - Method in interface fr.inrialpes.exmo.align.impl.edoal.Id
  Returns a plain representation of the value of this id.
getURI() - Method in class fr.inrialpes.exmo.align.impl.edoal.InstanceId
getURI() - Method in class fr.inrialpes.exmo.align.impl.edoal.PropertyId
getURI() - Method in class fr.inrialpes.exmo.align.impl.edoal.RelationId
getUri() - Method in enum fr.inrialpes.exmo.align.impl.Namespace
getURI() - Method in class fr.inrialpes.exmo.ontowrap.BasicOntology
getURI() - Method in interface fr.inrialpes.exmo.ontowrap.Ontology
getURI2() - Method in class fr.inrialpes.exmo.align.impl.renderer.SKOSRendererVisitor
getUriPrefix() - Method in enum fr.inrialpes.exmo.align.impl.Namespace
getValue() - Method in class fr.inrialpes.exmo.align.impl.edoal.ClassValueRestriction
getValue() - Method in class fr.inrialpes.exmo.align.impl.edoal.PropertyValueRestriction
getValue() - Method in class fr.inrialpes.exmo.align.impl.edoal.Value
getValue() - Method in class fr.inrialpes.exmo.align.service.jade.messageontology.Parameter
getValues() - Method in class fr.inrialpes.exmo.align.impl.BasicParameters
getValues() - Method in class fr.inrialpes.exmo.align.impl.Extensions
getVariable() - Method in class fr.inrialpes.exmo.align.impl.edoal.Expression
getX() - Method in class fr.inrialpes.exmo.align.impl.eval.Pair
getXML() - Method in interface fr.inrialpes.exmo.queryprocessor.RDFGraph
getXNamespace(String) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getXNamespaces() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
getY() - Method in class fr.inrialpes.exmo.align.impl.eval.Pair
GLOBAL - Static variable in class fr.inrialpes.exmo.ontowrap.OntologyFactory
graphConstructor - Variable in class fr.inrialpes.exmo.align.util.GenPlot
GraphEvaluator - Class in fr.inrialpes.exmo.align.impl.eval
  GraphEvaluator: an abstraction that is used for providing evaluation curves instead of values (or sets of values) Pair: only used for recording sets of points in a curve GraphEvaluator is used (generically) in the following way: - create a GraphEvaluator (new GraphEvaluator) - fill it with the set of results that you want to evaluate (.ingest( Alignment, Alignment) and this repetively - Finally create plot (.eval() ) This abstract class provides the ingest method but not eval which has to be implemented in subclasses.
GraphEvaluator() - Constructor for class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator
  Creation: A priori, evaluators can deal with any kind of alignments.
GREATER - Static variable in class fr.inrialpes.exmo.align.impl.edoal.Comparator
GroupAlign - Class in fr.inrialpes.exmo.align.util
  A batch class for an OWL ontology alignment processing.
GroupAlign() - Constructor for class fr.inrialpes.exmo.align.util.GroupAlign
groupEval(Message) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
  Evaluate a track: a set of results
GroupEval - Class in fr.inrialpes.exmo.align.util
  A basic class for synthesizing the results of a set of alignments provided by different algorithms.
GroupEval() - Constructor for class fr.inrialpes.exmo.align.util.GroupEval
GroupOutput - Class in fr.inrialpes.exmo.align.util
  A basic class for synthesizing the alignment results of an algorithm with regard to the ontology characteristics as a colored module.
GroupOutput() - Constructor for class fr.inrialpes.exmo.align.util.GroupOutput

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