C-Index (Alignment API and Server)
Date: 2010-03-31

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| Alignment API and Server 4.0
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## C

cache - Variable in class fr.inrialpes.exmo.align.service.DBServiceImpl
cache - Static variable in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntologyFactory
cache - Static variable in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntologyFactory
cache - Static variable in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3OntologyFactory
CACHED - Static variable in class fr.inrialpes.exmo.align.service.CacheImpl
CacheImpl - Class in fr.inrialpes.exmo.align.service
  This class caches the content of the alignment database.
CacheImpl(DBService) - Constructor for class fr.inrialpes.exmo.align.service.CacheImpl
calcPrefix() - Method in class fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor
callParser(Object) - Method in class fr.inrialpes.exmo.align.parser.AlignmentParser
  Parses the document corresponding to the URI given in parameter If the current process has links (import or include) to others documents then they are parsed.
callParser(XMLParser, Object) - Method in class fr.inrialpes.exmo.align.parser.AlignmentParser
  This dispatch is ridiculous, but that's life
callParser(RDFParser, Object) - Method in class fr.inrialpes.exmo.align.parser.AlignmentParser
CannotRenderAlignment - Class in fr.inrialpes.exmo.align.service
  Contains the messages that should be sent according to the protocol
CannotRenderAlignment(int, Message, String, String, String, Properties) - Constructor for class fr.inrialpes.exmo.align.service.CannotRenderAlignment
cell - Variable in class fr.inrialpes.exmo.align.impl.eval.EvalCell
cell() - Method in class fr.inrialpes.exmo.align.impl.eval.EvalCell
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.COWLMappingRendererVisitor
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.OWLAxiomsRendererVisitor
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SEKTMappingRendererVisitor
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SKOSRendererVisitor
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.SWRLRendererVisitor
cell - Variable in class fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor
cell - Variable in class fr.inrialpes.exmo.align.parser.TypeCheckingVisitor
cell - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
  the relation content as text...
Cell - Interface in org.semanticweb.owl.align
  Represents an correspondence between ontology entities.
cellSet - Variable in class fr.inrialpes.exmo.align.impl.eval.GraphEvaluator
cellSpec - Static variable in class fr.inrialpes.exmo.align.util.GroupOutput
CERTIFICATE - Static variable in class fr.inrialpes.exmo.align.impl.Annotations
changeColumnType(Statement, String, String, String) - Method in class fr.inrialpes.exmo.align.service.CacheImpl
characters(char[], int, int) - Method in class fr.inrialpes.exmo.align.parser.XMLParser
  Put the content in a variable
cl1 - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
  the first entity of a cell
cl2 - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
  the second entity of a cell
ClassConstruction - Class in fr.inrialpes.exmo.align.impl.edoal
  Represents a ClassExpression.
ClassConstruction() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
ClassConstruction(SyntaxElement.Constructor, Collection<ClassExpression>) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
ClassDomainRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
ClassDomainRestriction(PathExpression, ClassExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassDomainRestriction
  Constructs a typeCondition with the given restriction.
ClassExpression - Class in fr.inrialpes.exmo.align.impl.edoal
  Represents a ClassExpression.
ClassExpression() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassExpression
ClassId - Class in fr.inrialpes.exmo.align.impl.edoal
  A simple Id to represent a Class.
ClassId() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassId
  Creates an anonymous class pattern
ClassId(String) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassId
ClassId(URI) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassId
classlist1 - Variable in class fr.inrialpes.exmo.align.impl.MatrixMeasure
classlist2 - Variable in class fr.inrialpes.exmo.align.impl.MatrixMeasure
classMeasure(Object, Object) - Method in interface fr.inrialpes.exmo.align.impl.Similarity
classMeasure(Object, Object) - Method in class fr.inrialpes.exmo.align.ling.JWNLAlignment.WordNetMatrixMeasure
ClassOccurenceRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
  Represents a attributeOccurenceRestriction tag for a ClassExpressions.
ClassOccurenceRestriction(PathExpression, Comparator, int) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassOccurenceRestriction
  Constructs a attributeOccurenceRestriction with the given restriction.
ClassRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
  Superclass for all ClassRestrictions.
ClassRestriction(PathExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassRestriction
classScore - Variable in class fr.inrialpes.exmo.align.impl.eval.SymMeanEvaluator
ClassStructAlignment - Class in fr.inrialpes.exmo.align.impl.method
  Establishes an alignment based on the comparison of the properties that classes have in common.
ClassStructAlignment() - Constructor for class fr.inrialpes.exmo.align.impl.method.ClassStructAlignment
  Creation
ClassTypeRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
  Represents a type typeCondition tag for PropertyExpressions.
ClassTypeRestriction(PathExpression, Datatype) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassTypeRestriction
  Constructs a typeCondition with the given restriction.
ClassValueRestriction - Class in fr.inrialpes.exmo.align.impl.edoal
  Represents a type valueCondition tag for PropertyExpressions.
ClassValueRestriction(PathExpression, Comparator, ValueExpression) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.ClassValueRestriction
  Constructs a valueCondition with the given restriction.
cleanUp() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
  Can be used for reducing the amount of memory taken by an alignment Does nothing in BasicAlignment.
cleanUp() - Method in class fr.inrialpes.exmo.align.impl.DistanceAlignment
  Suppresses the distance matrix
cleanUpCache() - Method in class fr.inrialpes.exmo.align.service.CacheImpl
clear() - Method in class fr.inrialpes.exmo.ontowrap.OntologyCache
clear() - Static method in class fr.inrialpes.exmo.ontowrap.OntologyFactory
clearAllHasParameter() - Method in class fr.inrialpes.exmo.align.service.jade.messageontology.Action
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.jena25.JENAOntologyFactory
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.OntologyFactory
  All Ontologies must implement clearCache() which unload their ontologies if any cache is enabled.
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIOntologyFactory
clearCache() - Method in class fr.inrialpes.exmo.ontowrap.owlapi30.OWLAPI3OntologyFactory
clmatrix - Variable in class fr.inrialpes.exmo.align.impl.MatrixMeasure
clone() - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
  Generate a copy of this alignment object It has the same content but a different id (no id indeed)
clone() - Method in class fr.inrialpes.exmo.align.impl.BasicParameters
clone() - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
  Generate a copy of this alignment object
clone() - Method in class fr.inrialpes.exmo.align.impl.edoal.TransfService
clone() - Method in class fr.inrialpes.exmo.align.impl.Extensions
clone() - Method in class fr.inrialpes.exmo.align.service.WSAlignment
  Generate a copy of this alignment object
clone() - Method in interface org.semanticweb.owl.align.Alignment
  Implementation of the clone method
close() - Method in class fr.inrialpes.exmo.align.service.AlignmentService
close() - Method in interface fr.inrialpes.exmo.align.service.AlignmentServiceProfile
  Shutdown the Service and undeclare it from any registery
close() - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
close() - Method in class fr.inrialpes.exmo.align.service.CacheImpl
close() - Method in interface fr.inrialpes.exmo.align.service.DBService
close() - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
close() - Method in interface fr.inrialpes.exmo.align.service.Directory
  Shutdown the connection and/or registration to the directory
close() - Method in class fr.inrialpes.exmo.align.service.HTMLAServProfile
  Je//: should certainly do more than that!
close() - Method in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServProfile
close() - Method in class fr.inrialpes.exmo.align.service.OysterDirectory
  Shutdown the connection and/or registration to the directory
close() - Method in class fr.inrialpes.exmo.align.service.WSAServProfile
close() - Method in class fr.inrialpes.exmo.align.util.NullStream
codec - Variable in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServiceAgent
codomain - Variable in class fr.inrialpes.exmo.align.impl.edoal.RelationCoDomainRestriction
collectURIs(Cell) - Method in class fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor
color - Variable in class fr.inrialpes.exmo.align.util.ExtGroupEval
color - Variable in class fr.inrialpes.exmo.align.util.GroupEval
color - Variable in class fr.inrialpes.exmo.align.util.GroupOutput
colorFormat(double) - Method in class fr.inrialpes.exmo.align.util.GroupOutput
commandLineParams - Variable in class fr.inrialpes.exmo.align.service.AServProtocolManager
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassOccurenceRestriction
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassValueRestriction
Comparator - Class in fr.inrialpes.exmo.align.impl.edoal
Comparator() - Constructor for class fr.inrialpes.exmo.align.impl.edoal.Comparator
Comparator(URI) - Constructor for class fr.inrialpes.exmo.align.impl.edoal.Comparator
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.PropertyValueRestriction
comparator - Variable in class fr.inrialpes.exmo.align.impl.edoal.ValueConstraint
compareTo(Cell) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
  Used to order the cells in an alignment: -- this > c iff this.getStrength() < c.getStrength() --
components - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassConstruction
  Holds all expressions.
components - Variable in class fr.inrialpes.exmo.align.impl.edoal.PropertyConstruction
  Holds all expressions.
components - Variable in class fr.inrialpes.exmo.align.impl.edoal.RelationConstruction
  Holds all expressions.
compose(Alignment) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
  The second alignment is composed with the first one meaning that for any pair (o, o', n, r) in O and (o',o", n', r') in O' the resulting alignment will contain: ( o, o", join(n,n'), compose(r, r')) iff compose(r,r') exists.
compose(Cell) - Method in class fr.inrialpes.exmo.align.impl.BasicCell
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.BasicRelation
  By default...
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALRelation
compose(Cell) - Method in class fr.inrialpes.exmo.align.impl.ObjectCell
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.EquivRelation
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.IncompatRelation
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.SubsumedRelation
compose(Relation) - Method in class fr.inrialpes.exmo.align.impl.rel.SubsumeRelation
compose(Message) - Method in class fr.inrialpes.exmo.align.service.AServProtocolManager
compose(Alignment) - Method in interface org.semanticweb.owl.align.Alignment
compose(Cell) - Method in interface org.semanticweb.owl.align.Cell
compose(Relation) - Method in interface org.semanticweb.owl.align.Relation
compute(Properties) - Method in class fr.inrialpes.exmo.align.impl.MatrixMeasure
compute(Properties) - Method in interface fr.inrialpes.exmo.align.impl.Similarity
computeDerived() - Method in class fr.inrialpes.exmo.align.impl.eval.PRecEvaluator
computeEffSimilarity(Cell, Enumeration) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
  This computes similarity depending on structural measures: the similarity is symALPHA^minval, symALPHA being lower than 1.
computeOrientSimilarity(Cell, Enumeration) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
  This computes similarity depending on structural measures: the similarity is symALPHA^minval, symALPHA being lower than 1.
computeSymSimilarity(Cell, Enumeration) - Method in class fr.inrialpes.exmo.align.impl.eval.ExtPREvaluator
  This computes similarity depending on structural measures: the similarity is symALPHA^minval, symALPHA being lower than 1.
ConcatenatedIterator<O> - Class in fr.inrialpes.exmo.align.impl
  This class builds a composite iterator from two iterators This helps writing more concise code.
ConcatenatedIterator(Iterator<O>, Iterator<O>) - Constructor for class fr.inrialpes.exmo.align.impl.ConcatenatedIterator
conn - Variable in class fr.inrialpes.exmo.align.service.CacheImpl
conn - Variable in class fr.inrialpes.exmo.align.service.DBServiceImpl
connect(String) - Method in interface fr.inrialpes.exmo.align.service.DBService
connect(String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
connect(String, String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
connect(String, String, String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
connect(String, String, String, String, String) - Method in interface fr.inrialpes.exmo.align.service.DBService
connect(String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
connect(String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
connect(String, String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
connect(String, String, String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
connect(String, String, String, String, String) - Method in class fr.inrialpes.exmo.align.service.DBServiceImpl
connection - Variable in class fr.inrialpes.exmo.align.service.AlignmentService
CONNECTION_ERROR - Variable in class fr.inrialpes.exmo.align.service.CacheImpl
constrainedPath - Variable in class fr.inrialpes.exmo.align.impl.edoal.ClassRestriction
  The attribute on which the restriction should be applied.
CONSTRUCT - Static variable in class fr.inrialpes.exmo.queryprocessor.Type
content - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
  the content found as text...
content - Variable in class fr.inrialpes.exmo.align.service.Message
correct - Variable in class fr.inrialpes.exmo.align.impl.eval.EvalCell
correct() - Method in class fr.inrialpes.exmo.align.impl.eval.EvalCell
COWLMappingRendererVisitor - Class in fr.inrialpes.exmo.align.impl.renderer
  Renders an alignment as a new ontology merging these.
COWLMappingRendererVisitor(PrintWriter) - Constructor for class fr.inrialpes.exmo.align.impl.renderer.COWLMappingRendererVisitor
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.ObjectAlignment
createCell(String, Object, Object, Relation, double) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
createDistanceMatrix() - Method in interface fr.inrialpes.exmo.align.impl.PreAlignment
createNewAlignment(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
  Algebraic part This is to be improved by (TODO): - improving cell equivalence (maybe not dependent on the confidence...
createNewAlignment(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.ObjectAlignment
  Generate a copy of this alignment object
createNewAlignment(Object, Object) - Method in class fr.inrialpes.exmo.align.impl.URIAlignment
createRelation(String) - Static method in class fr.inrialpes.exmo.align.impl.BasicRelation
createStatement() - Method in class fr.inrialpes.exmo.align.service.CacheImpl
CTmanager - Variable in class fr.inrialpes.exmo.align.service.jade.JadeFIPAAServiceAgent
current - Variable in class fr.inrialpes.exmo.align.impl.MEnumeration
current - Variable in class fr.inrialpes.exmo.align.impl.MIterator
currentElem - Variable in class fr.inrialpes.exmo.ontowrap.owlapi10.OWLAPIAnnotIt
curronto - Variable in class fr.inrialpes.exmo.align.parser.XMLParser
cut(double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
  Default cut implementation For compatibility with API until version 1.1
cut(String, double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
  Cut refinement : - getting those cells with strength above n (hard) - getting the n best cells (best) - getting those cells with strength at worse n under the best (span) - getting the n% best cells (perc) - getting those cells with strength at worse n% of the best (prop) - getting all cells until a gap of n (hardgap) - getting all cells until a gap of n% of the last (propgap) Rule: threshold is betweew 1 and 0
CUT - Class in fr.inrialpes.exmo.align.service.jade.messageontology
  Protege name: CUT
CUT() - Constructor for class fr.inrialpes.exmo.align.service.jade.messageontology.CUT
CUT - Static variable in class fr.inrialpes.exmo.align.service.jade.messageontology.JADEFIPAAlignmentServerOntology
cut(String, double) - Method in interface org.semanticweb.owl.align.Alignment
cut(double) - Method in interface org.semanticweb.owl.align.Alignment
cut2(double) - Method in class fr.inrialpes.exmo.align.impl.BasicAlignment
  The cut function suppresses from an alignment all the cell over a particular threshold

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